- David Touretzky's MATLAB course:
- FSL a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data
- MVPA Toolbox Google Code
- Searchmight a toolbox designed specifically for information mapping (a.k.a. "searchlight maps") using machine learning classifiers, developed by the Botvinick Lab in the Princeton Neuroscience Institute.
- Plotting repository?